Molecular Dynamics(MD) Simulations - 2 Weeks
Explore Molecules In Motion With Hands On Molecular Dynamics Training!
begin your journey with a comprehensive introduction to molecular docking. Set up your system environment with essential tools like AutoDock Tools, PyRx, and PyMOL. Learn how to access and extract structural data from databases like PDB and PubChem.
Run real-time simulations using PyRx and AutoDock Vina. Dive deep into scoring functions, conformational flexibility, and binding affinity. Execute batch docking for multiple ligands and understand the practical nuances of virtual screening.
Apply your learning through a mentor-guided mini project. Participate in live Q&A sessions, resolve doubts in real-time, and earn a certification backed by hands-on project experience.
Master the preparation of ligands and proteins for docking simulations. Clean, optimize, and convert molecular structures using Open Babel and AutoDock Tools. Learn the basics of molecular modeling and how to prepare receptors and ligands for accurate docking.
Use PyMOL and Discovery Studio to visualize docking results. Identify key interactions like hydrogen bonding, hydrophobic contacts, and RMSD. Generate high-resolution publication-ready images and analyze binding poses with confidence.
Explore Molecules In Motion With Hands On Molecular Dynamics Training!
Join our practical bioinformatics online training program. Ideal for students and researchers from top institutes. Start learning bioinformatics today!
All related to the subject matter were perfectly good
Obtaining a particular data from the given raw data was the most interesting part
Start your journey with purpose
Research Enthusiast | Educator | Biotech Builder As the founder of Biopractify and PG representative at the ACS IIT Delhi chapter, I combine academic research insight with startup execution. My work focuses on empowering India’s next generation of life science professionals through digital-first, industry-aligned training in bioinformatics, microbial ecology, and computational biology. Passionate about applied science and inclusive education, I aim to bridge the knowledge gap with scalable, low-carbon, skill-based biotech learning.
Molecular Dynamics Simulations for Biologists Workshop
This is a 2-week live, mentor-led internship that introduces you to molecular docking, MD simulations, and protein-ligand interaction analysis. You’ll gain hands-on experience with tools like AutoDock, PyRx, PyMOL, SwissDock, and Discovery Studio, all under expert guidance.
Anyone from a life sciences background can apply:
B.Sc., M.Sc., B.Tech., M.Tech., or PhD students
Teaching professionals
Industry professionals in biotech, bioinformatics, or pharma R&D
Not at all!
This is a beginner-friendly internship. We guide you step-by-step through all tools and processes — no coding or prior simulation experience is required.
You’ll be using:
AutoDock Tools & Vina
PyRx
PyMOL
Open Babel
SwissDock
All of them are free and open-source. Setup instructions will be shared in the orientation session
Yes. Every participant who completes the internship will get a verifiable e-certificate issued by Biopractify & Biolabs Research Division.
The program is conducted live over Zoom with real-time mentorship.
All sessions are also recorded and shared with lifetime access so you can revisit anytime.
“Tell me and I forget, teach me and I may remember, involve me and I learn.”
— Benjamin Franklin